@Book{pinheiro,
Author="Pinehiro, J.C. and Bates, D.M.",
Title="Mixed Effects Models in S and S-Plus", Year="2002",
Publisher="Springer", Edition="3rd.", }

@Article{chung.tmi.2007,
  author =       {Chung, M.K. and Dalton, K.M. and L. Shen and Evans, A.C. and Davidson, R.J.},
  title =        {Weighted Fourier representation and its application to quantifying the amount of gray matter},
    year =         {2007},
  journal =      {IEEE transactions on medical imaging},
  volume="26",
  pages={566--581},
  }
@ARTICLE{dalton.2005,
  AUTHOR =       {Dalton, K.M. and Nacewicz, B.M. and Johnstone, T. and Schaefer, H.S.
  and Gernsbacher, M.A. and Goldsmith, H.H. and Alexander, A.L. and Davidson, R.J.},
  TITLE =        {Gaze fixation and the neural circuitry of face processing in autism},
  JOURNAL =      {Nature Neuroscience},
  YEAR =         {2005},
  volume =       {8},
  pages =        {519--526},
}

@Article{nacewicz.2006,
  author =       {Nacewicz, B.M. and Dalton, K.M. and Johnstone, T. and Long, M.T. and McAuliff, E.M. and Oakes, T.R. and Alexander, A.L and Davidson, R.J.},
  title =        {Amygdala volume and nonverbal social impairment in adolescent and adult males with autism},
  journal =      {Arch. Gen. Psychiatry.},
  year =         {2006},
  volume =       {63},
  pages =        {1417--1428},
}

@Article{yu.2006,
  author =       { Yu, P. and    Grant, P.E.  and  Qi, Y. and   Han, X. and    Segonne, F. and   Pienaar, R.  and Busa, E.  and  Pacheco, J. and  Makris, N.  and Buckner, R.L. and  Golland, P. and  Fischl, B.   },
  title =        { Cortical Surface Shape Analysis Based on Spherical Wavelets},
  journal =      {IEEE Transactions on Medical Imaging},
  year =         {2007},
  volume =       {26},
  pages =        {582--597},
}
@article{Brechbuhler95,
 author = {Ch. Brechb\"{u}hler and G. Gerig and O. K\"{u}bler},
 title = {Parametrization of closed surfaces for 3-D shape description},
 journal = {Computer Vision and Image Understanding},
 volume = {61},
 number = {2},
 year = {1995},
 issn = {1077-3142},
 pages = {154--170},
 publisher = {Elsevier Science Inc.},
 address = {New York, NY, USA},
 }
 @inproceedings{Gerig01,
 author = {G. Gerig and M. Styner and D. Jones and D. Weinberger and J. Lieberman},
 title = {Shape Analysis of Brain Ventricles Using SPHARM},
 booktitle = {MMBIA '01: Proceedings of the IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA'01)},
 year = {2001},
 isbn = {0-7695-1336-0},
 pages = {171},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
 }
 @techreport{Pizer99,
 author = {Stephen M Pizer and Daniel Fritsch and Paul Yushkevich and Valen Johnson and Edward Chaney},
 title = {Segmentation, Registration and measurement of Shape Variation via Image Object Shape},
 year = {1999},
 source = {http://www.ncstrl.org:8900/ncstrl/servlet/search?formname=detail\&id=oai%3Ancstrlh%3Auncch_cs%3AUNCCH_CS%2F%2FTR99-010},
 publisher = {University of North Carolina at Chapel Hill},
 address = {Chapel Hill, NC, USA},
 }
 @inproceedings{Leventon00,
        AUTHOR = "Leventon, M.E. and Grimson, W.E.L. and Faugeras, O.D.",
        TITLE = "Statistical Shape Influence in Geodesic Active Contours",
        BOOKTITLE = "CVPR",
        YEAR = "2000",
        PAGES = "316--323",
 }
 @inproceedings{Cootes99,
 author = {Timothy F. Cootes and C. Beeston and Gareth J. Edwards and Christopher J. Taylor},
 title = {A Unified Framework for Atlas Matching Using Active Appearance Models},
 booktitle = {IPMI '99: Proceedings of the 16th International Conference on Information Processing in Medical Imaging},
 year = {1999},
 isbn = {3-540-66167-0},
 pages = {322--333},
 publisher = {Springer-Verlag},
 address = {London, UK},
 }
@article{Staib92,
 author = {Lawrence H. Staib and James S. Duncan},
 title = {Boundary Finding with Parametrically Deformable Models},
 journal = {IEEE Trans. Pattern Anal. Mach. Intell.},
 volume = {14},
 number = {11},
 year = {1992},
 issn = {0162-8828},
 pages = {1061--1075},
 doi = {http://dx.doi.org/10.1109/34.166621},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
 }
@phdthesis{Staib91,
 author = {Lawrence Hamilton Staib},
 title = {Parametrically deformable contour models for image analysis},
 year = {1991},
 order_no = {UMI Order No. GAX91-22299},
 publisher = {Yale University},
 address = {New Haven, CT, USA},
 }
@inproceedings{Wang98,
 author = {Y. Wang and L. H. Staib},
 title = {Boundary Finding with Correspondence Using Statistical Shape Models},
 booktitle = {CVPR '98: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition},
 year = {1998},
 isbn = {0-8186-8497-6},
 pages = {338--345},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
 }
@inproceedings{El-Baz05,
 author = {Ayman El-Baz and Seniha E. Yuksel and Hongjian Shi and Aly A. Farag and Mohamed A. El-Ghar and Tarek Eldiasty and Mohamed A. Ghoneim},
 title = {2D and 3D Shape Based Segmentation Using Deformable Models},
 booktitle = {MICCAI},
 year = {2005},
 pages = {821--829}
 }
inproceedings{Pohl05,
        AUTHOR = "Pohl, K.M. and Fisher, J. and Kikinis, R. and Grimson, W.E.L. and Wells, III, W.M.",
        TITLE = "Shape Based Segmentation of Anatomical Structures in Magnetic Resonance Images",
        BOOKTITLE = "CVBIA05",
        YEAR = "2005",
        PAGES = "489--498",
}
@InProceedings{Kumar05,
   author = "Kumar, M.~P. and Torr, P.~H.~S. and Zisserman, A.",
   title = "{OBJ} {CUT}",
   booktitle = "Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, San Diego",
   year = "2005",
   volume = "1",
   pages = "18--25",
}
@InProceedings{Gerig02,
   author = "Gerig, G. and Styner, M. and Szekely, G.",
   title = " Statistical shape models for segmentation and structural analysis",
   booktitle = "ISBI",
   year = "2002",
   month = "November",
   pages = "18--21",
}
@inproceedings{Boykov00,
 author = {Yuri Boykov and Marie-Pierre Jolly},
 title = {Interactive Organ Segmentation Using Graph Cuts},
 booktitle = {MICCAI '00: Proceedings of the Third International Conference on Medical Image Computing and Computer-Assisted Intervention},
 year = {2000},
 isbn = {3-540-41189-5},
 pages = {276--286},
 publisher = {Springer-Verlag},
 address = {London, UK},
 }
@inproceedings{Bruijne04,
 author = {Marleen de Bruijne and Mads Nielsen},
 title = {Image Segmentation by Shape Particle Filtering},
 booktitle = {ICPR '04: Proceedings of the Pattern Recognition, 17th International Conference on (ICPR'04) Volume 3},
 year = {2004},
 isbn = {0-7695-2128-2},
 pages = {722--725},
 doi = {http://dx.doi.org/10.1109/ICPR.2004.474},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
 }
@inproceedings{Borenstein02,
 author = {Eran Borenstein and Shimon Ullman},
 title = {Class-Specific, Top-Down Segmentation},
 booktitle = {ECCV '02: Proceedings of the 7th European Conference on Computer Vision-Part II},
 year = {2002},
 isbn = {3-540-43744-4},
 pages = {109--124},
 publisher = {Springer-Verlag},
 address = {London, UK},
 }
@inproceedings{Leibe03,
        AUTHOR = "Leibe, B. and Schiele, B.",
        TITLE = "Interleaved Object Categorization and Segmentation",
        BOOKTITLE = "BMVC03",
        YEAR = "2003",
}
@ARTICLE{Zhuowen:2005,
  AUTHOR =       {Tu, Zhuowen and Chen, Xiangrong and Yuille, Alan and Zhu, Song-Chun},
  TITLE =        {Image Parsing: Unifying Segmentation, Detection, and Recognition},
  JOURNAL =      {International Journal of Computer Vision},
  YEAR =         {2005},
  month= {July},
  volume =       {63},
  pages =        {113--140},
}
@article{barbu:2007,
author="Adrian Barbu and Song-Chun Zhu",
title="Generalizing Swendsen-Wang for Image Analysis",
journal="Journal of Computational $\&$ Graphical Statistics",
year="2007",
month="December",
volume="16",
number="4",
pages="877--900",
publisher="American Statistial Association"
}
@Book{Sethian99,
Author="James Albert Sethian",
Title="Level Set Methods and Fast Marching Methods: Evolving Interfaces in Computational Geometry, Fluid Mechanics, Computer Vision and Material Science", Year="2002",
Publisher="Cambridge University Press",
ISBN="0521645573",
}
@inproceedings{Fan07,
 author = {Fan AC and Fisher JW and Wells WM and Levitt JJ and Willsky AS},
 title = {MCMC curve sampling for image segmentation},
 booktitle = {MICCAI '07: Proceedings of the Third International Conference on Medical Image Computing and Computer-Assisted Intervention},
 year = {2007},
 pages = {477--485},
 publisher = {Springer-Verlag},
 address = {Berlin, Heidelberg},
 }
@inproceedings{Freedman05,
 author = {Daniel Freedman and Tao Zhang},
 title = {Interactive Graph Cut Based Segmentation with Shape Priors},
 booktitle = {CVPR '05: Proceedings of the 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05) - Volume 1},
 year = {2005},
 isbn = {0-7695-2372-2},
 pages = {755--762},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
 }
@inproceedings{Rousson02,
 author = {Mikael Rousson and Nikos Paragios},
 title = {Shape Priors for Level Set Representations},
 booktitle = {ECCV '02: Proceedings of the 7th European Conference on Computer Vision-Part II},
 year = {2002},
 isbn = {3-540-43744-4},
 pages = {78--92},
 publisher = {Springer-Verlag},
 address = {London, UK},
 }
@inproceedings{Hossam05,
 author = {Hossam E. Abd El Munim and Aly A. Farag},
 title = {A Shape-Based Segmentation Approach: An Improved Technique Using Level Sets},
 booktitle = {ICCV '05: Proceedings of the Tenth IEEE International Conference on Computer Vision},
 year = {2005},
 isbn = {0-7695-2334-X-02},
 pages = {930--935},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
 }
 @article{Tu02,
 author = {Zhuowen Tu and Song-Chun Zhu},
 title = {Image Segmentation by Data-Driven Markov Chain Monte Carlo},
 journal = {IEEE Trans. Pattern Anal. Mach. Intell.},
 volume = {24},
 number = {5},
 year = {2002},
 issn = {0162-8828},
 pages = {657--673},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
 }
@article{Kumar06,
 author = {Sanjiv Kumar and Martial Hebert},
 title = {Discriminative Random Fields},
 journal = {Int. J. Comput. Vision},
 volume = {68},
 number = {2},
 year = {2006},
 issn = {0920-5691},
 pages = {179--201},
 publisher = {Kluwer Academic Publishers},
 address = {Hingham, MA, USA},
 }
@article{Blanchard05,
 author = {Gilles Blanchard and Donald Geman},
 title = {Hierarchical testing designs for pattern recognition},
 journal = {Annals of Statistics},
 volume = {33},
 number = {3},
 year = {2005},
 pages = {1155-1202}
 }
@article{Shi00,
 author = {Jianbo Shi and Jitendra Malik},
 title = {Normalized Cuts and Image Segmentation},
 journal = {IEEE Trans. Pattern Anal. Mach. Intell.},
 volume = {22},
 number = {8},
 year = {2000},
 issn = {0162-8828},
 pages = {888--905},
 doi = {http://dx.doi.org/10.1109/34.868688},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
}
@article{Boykov-Veksler01,
 author = {Yuri Boykov and Olga Veksler and Ramin Zabih},
 title = {Fast Approximate Energy Minimization via Graph Cuts},
 journal = {IEEE Trans. Pattern Anal. Mach. Intell.},
 volume = {23},
 number = {11},
 year = {2001},
 issn = {0162-8828},
 pages = {1222--1239},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
 }
@inproceedings{gadluru06,
 author = {Ganesh Adluru and Edward D. Bella and Ross T. Whitaker},
 title = {Automatic segmentation of cardiac short axis slices in perfusion},
 booktitle = {Biomedical Imaging: Nano to Macro, 2006. 3rd IEEE International Symposium on},
 year = {2006},
 month = {April},
 isbn = {0-7803-9576-X},
 pages = {133--136},
 }
 @article{Kolmogrov04,
    author = {Kolmogorov, V.  and Zabin, R. },
    journal = {Pattern Analysis and Machine Intelligence, IEEE Transactions on},
    keywords = {mrfs},
    number = {2},
    pages = {147--159},
    title = {What energy functions can be minimized via graph cuts?},
    volume = {26},
    year = {2004}
}
@article{Boykov06,
 author = {Yuri Boykov and Gareth Funka-Lea},
 title = {Graph Cuts and Efficient N-D Image Segmentation},
 journal = {Int. J. Comput. Vision},
 volume = {70},
 number = {2},
 year = {2006},
 issn = {0920-5691},
 pages = {109--131},
 publisher = {Kluwer Academic Publishers},
 address = {Hingham, MA, USA},
 }
